If you use the PhyloData Java library, please cite this website:
Ochsner, T. S. (2025). PhyloData. https://phylodata.com
Additionally, you should cite all experiments you use. Calling load_experiments (or load_experiment) will automatically create a bibtex file with all relevant citations. By default, this file will be stored in the same folder as the experiments.
Calling load_experiments) will overwrite any existing bibtex file. If you load experiments multiple times and want to get a bibtex file for every call, you can use the citations_file argument to specify the location of the bibtex file:
from pathlib import Path
from phylodata import load_experiments, ExperimentToLoad
experiments = load_experiments(
[
ExperimentToLoad("nen-2019-postglacial-qh0e", version=1),
ExperimentToLoad("nen-2019-postglacial-n1bf", version=1),
],
citations_file=Path("some/folder/citations.bib"),
)